1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACATGTTCGAGTCGCTCGGCTACCAGTCGGGCTTCTTCCTCTCCCAGCTCTTCTCCTCCTCGCGGGGGACCTCGCCGTCGCCGTCGTCGTTCCCGCTTAAgcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggcc...
species | Oryza sativa |
transcript | LOC_Os11g25920.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCTCCTCGCGGGGGACCTCGCCGTCGCCGTCGTCGTTCCCGCTTAA --G-CAGCGGCGGCGCAGGACGCGGGGCACGGTGGCGCGGAGAACGTGGAG
genomic: TTCTCCTCCTCGCGGGGGACCTCGCCGTCGCCGTCGTCGTTCCCGCTTAAgcagcagcag ... cgggagcaagACGGCGGCGGCGGCGCAGGACGCGGGGCACGGCGGCGCGGAGAACGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGTTCGAGTCGCTCGGCTACCAGTCGGGCTTCTTCCTCTCCCAGCTCTTCTCCTCCTCGCGGGGGACCTCGCCGTCGCCGTCGTCGTTCCCGCTTAAgcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggccggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggccgg