1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGgtatactagaaacattctttggctacttcaaattttggtgaaactataattggtttcaccagattttatatctcttaactatttggtatgttgttttattcag
species | Oryza sativa |
transcript | LOC_Os11g17610.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTG TAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGEST: gi|86485836|gb|CI128469.1|CI128469
genomic: AACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGgtatactaga ... ttttattcagTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
EST: AAAGCAGATATAATCAGTGATGCCAAAACTG TAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGEST: gi|88485472|gb|CI422743.1|CI422743
genomic: AAAGCAGATATAATCAGTGATGGCAAAACTGgtatactaga ... ttttattcagTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
EST: ATCAGTGATGGCAAAACTG TAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGEST: gi|86490045|gb|CI132678.1|CI132678
genomic: ATCAGTGATGGCAAAACTGgtatactaga ... ttttattcagTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
EST: AACCATCATGCGGAAAGGAAAAGCAGAAATAATCAGTGATGGCAAAACTG TAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGEST: gi|218499213|gb|FG962191.1|FG962191
genomic: AACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGgtatactaga ... ttttattcagTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
EST: AACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTG TAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
genomic: AACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGgtatactaga ... ttttattcagTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGgtatactagaaacattctttggctacttcaaattttggtgaaactataattggtttcaccagattttatatctcttaactatttggtatgttgttttattcag
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - GCAGAT