Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTTCCACAAGGGCAGCTGTAAACCAAACTCTGTAAATCAGGACATTACAATATTTGGTGCATTGCTTGTGgtaaagtacaactgtagtgtgctcaatagtactatgattgttccaatctagctatgaagttgagcttactctgctcttttacgactctgtag

Basic information

species Oryza sativa
transcript LOC_Os06g51460.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g51460.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 7
AATGCTTCCACAAGGGCAGCTGTAAACCAAACTCTGTAAATCAGGACATTACAATATTTGGTGCATTGCTTGTGgtaaagtacaactgtagtgtgctcaatagtactatgattgttccaatctagctatgaagttgagcttactc---tgctcttttacgactctgtag
||||||||||||| || |||||||||||||||||   |||||||||||| || ||||| |||||  |||||||||||      |    |  ||        | | | | || | |     |||  | |||||    |  | | ||   || |  || | |   ||||||
AATGCTTCCACAAAGGAAGCTGTAAACCAAACTCCACAAATCAGGACATCACCATATTCGGTGCGCTGCTTGTGgta---cgtactcttcatgcatctcgcatttcaaagagtatgatg-tctttcaatgaa-ccaaattaagtcggatggttcttcatg-tactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88219043|gb|CI220603.1|CI220603
EST:     AACCAAACTCTGTAAATCAGGACATTACAATATTTGGTGCATTGCTTGTG                         GGTGCCTTGAGTTTAGTACTGTTGATCATTTACAACTTGTCAGGGCAACTT
genomic: AACCAAACTCTGTAAATCAGGACATTACAATATTTGGTGCATTGCTTGTGgtaaagtaca ... gactctgtagGGTGCCTTGAGTTTAGTACTGTTGATCATTTACAACTTCTCAGGGCAACTT