1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCATCTCGGTAAAAGCAAAGGACAGTTGAACGATGATCCTAATGAGTATGAAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgctgttgcattcttgcaatttgtcaatatgttcgctgactagcatttttctatctcatctttgtgcag
species | Oryza sativa |
transcript | LOC_Os06g30060.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86481973|gb|CI124606.1|CI124606
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29662617|gb|CB658892.1|CB658892
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29623764|gb|CB628775.1|CB628775
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29645349|gb|CB650356.1|CB650356
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29618260|gb|CB623272.1|CB623272
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86504148|gb|CI146781.1|CI146781
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|87038280|gb|CI192902.1|CI192902
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATCCACTGTCATGCAATACCATTEST: gi|86478395|gb|CI121028.1|CI121028
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: ATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29668809|gb|CB665084.1|CB665084
genomic: ATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29662616|gb|CB658891.1|CB658891
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGNGAAGCCAGAAGTTAAG CCTGTATATGTEST: gi|86869286|gb|CI339010.1|CI339010
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGT
EST: GGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29662619|gb|CB658894.1|CB658894
genomic: GGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86597617|gb|CI274608.1|CI274608
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: ATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29657197|gb|CB653472.1|CB653472
genomic: ATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTTTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86430267|gb|CI082690.1|CI082690
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86478440|gb|CI121073.1|CI121073
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: GGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTGGATTCACTGTCATGCAATACCATTEST: gi|86430858|gb|CI083281.1|CI083281
genomic: GGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86493522|gb|CI136155.1|CI136155
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29656692|gb|CB652967.1|CB652967
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|87031161|gb|CI259741.1|CI259741
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86902082|gb|CI300321.1|CI300321
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86478057|gb|CI120690.1|CI120690
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AGATGATGTTCTAGAGGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|5003280|gb|AU068429.1|AU068429
genomic: AGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|8860143|gb|AU097461.1|AU097461
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAN CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|86479435|gb|CI122068.1|CI122068
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: ATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|89168687|gb|CI038539.1|CI038539
genomic: ATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: TAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29671364|gb|CB667639.1|CB667639
genomic: TAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATTEST: gi|29636796|gb|CB641805.1|CB641805
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
EST: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAG CCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
genomic: AAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgc ... ctttgtgcagCCTGTATATGTCAAAGATGACTTCTTTGATTCACTGTCATGCAATACCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTCGGTAAAAGCAAAGGACAGTTGAACGATGATCCTAATGAGTATGAAGATGATGTTCTAGAAGATGATATTTCTCCTGGGAAGCCAGAAGTTAAGgtagtagcgctgttgcattcttgcaatttgtcaatatgttcgctgactagcatttttctatctcatctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT