1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTTTGTGCTAGCGGTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaataagcttttgtttatacttgttttttttttatcatgatggcctacatttttcacaacagtaataagctttggagatctctactaaatttcac...
species | Oryza sativa |
transcript | LOC_Os05g49200.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|29687282|gb|CB683557.1|CB683557
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|58668482|gb|CK057168.1|CK057168
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|33683538|gb|CF311777.1|CF311777
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|58596651|gb|CK007179.1|CK007179
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|125863426|gb|EL586708.1|EL586708
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|29675128|gb|CB671403.1|CB671403
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|29637768|gb|CB642777.1|CB642777
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGACAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|58668099|gb|CK056785.1|CK056785
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|29660989|gb|CB657264.1|CB657264
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|29627821|gb|CB632832.1|CB632832
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAEST: gi|58587529|gb|CF985837.1|CF985837
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAA
EST: AGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCGATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|55827430|gb|AU030192.2|AU030192
genomic: AGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|218480608|gb|FG959514.1|FG959514
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|218495569|gb|FG950148.1|FG950148
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|88396547|gb|CI601030.1|CI601030
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|86847366|gb|CI286963.1|CI286963
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTAEST: gi|58592991|gb|CF991299.1|CF991299
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTA
EST: AGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCGATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|33381232|gb|CF196575.1|CF196575
genomic: AGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|58599924|gb|CK010452.1|CK010452
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: TTGTTCAGCTATNAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|218481767|gb|FG945139.1|FG945139
genomic: TTGTTCAGCTAT-AGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|218486960|gb|FG945468.1|FG945468
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCEST: gi|218484121|gb|FG947440.1|FG947440
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGEST: gi|29639939|gb|CB644948.1|CB644948
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGG
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA GCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTEST: gi|66924030|gb|CX110878.1|CX110878
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACT
EST: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACA ACCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
genomic: GTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaata ... atcatcgcagGCCATAATCACTGAAATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTTGTGCTAGCGGTTGTTCAGCTATAGCAGACTCTGGAACATCATTGCTTGCTGGCCCCACAgtacgtaataagcttttgtttatacttgttttttttttatcatgatggcctacatttttcacaacagtaataagctttggagatctctactaaatttcac
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