1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacacctagcactaacttcccttggcatgcttggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcag
species | Oryza sativa |
transcript | LOC_Os05g48020.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|89177456|gb|CI390635.1|CI390635
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|27548352|gb|CA767492.2|CA767492
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88459478|gb|CI519539.1|CI519539
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: TAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88271549|gb|CI387602.1|CI387602
genomic: TAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88962991|gb|CI025477.1|CI025477
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|29656422|gb|CB652697.1|CB652697
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|33802714|gb|CF327228.1|CF327228
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86537000|gb|CI177206.1|CI177206
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCTACGTCAGATTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86539748|gb|CI179954.1|CI179954
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|33804306|gb|CF328027.1|CF328027
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88561103|gb|CI491820.1|CI491820
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: GATTTGAAGGATACCAACGTCAGACTGAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88459295|gb|CI516973.1|CI516973
genomic: GATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86842355|gb|CI335259.1|CI335259
genomic: ACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88374342|gb|CI513429.1|CI513429
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: GAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88537361|gb|CI465192.1|CI465192
genomic: GAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: AAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|8858653|gb|AU095971.1|AU095971
genomic: AAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88561318|gb|CI492035.1|CI492035
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88378248|gb|CI503814.1|CI503814
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: CGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|89181470|gb|CI112976.1|CI112976
genomic: CGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88378282|gb|CI503848.1|CI503848
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTGTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86870133|gb|CI318049.1|CI318049
genomic: ACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTCCTCTGTGTTATTEST: gi|86869693|gb|CI322179.1|CI322179
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATGGGAAGAATACCAACGTCAGACTAAAAGAGACCCTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCA-TGATATCGTCCTGCTCTCTGTTATTEST: gi|88206035|gb|CI205884.1|CI205884
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCTACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86869435|gb|CI346295.1|CI346295
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88561863|gb|CI492580.1|CI492580
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88482256|gb|CI419527.1|CI419527
genomic: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88544436|gb|CI472534.1|CI472534
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88292423|gb|CI500371.1|CI500371
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: CCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88836744|gb|CI014745.1|CI014745
genomic: CCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88561242|gb|CI491959.1|CI491959
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: AGAATACCAACGTCAGACTGAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|58684769|gb|CK073456.1|CK073456
genomic: AGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88263973|gb|CI367747.1|CI367747
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|14192124|gb|AU184335.1|AU184335
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88270055|gb|CI381353.1|CI381353
genomic: TACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88538916|gb|CI467982.1|CI467982
genomic: ATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|3761646|gb|C98894.1|C98894
genomic: ACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: CCAACGTCANGACTAAAAGGGACCGTTCTTCAG CTGGAGATCTANTCGCAACTTCTGCCNTGATATCGTCCTGCTCTGTGTTATEST: gi|88255735|gb|CI354559.1|CI354559
genomic: CCAACGTCA-GACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCT-GAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: ACACAGATTT-AAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCA-TGATATCGTCCTGCTCTGTGTTATTEST: gi|88323794|gb|CI558815.1|CI558815
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: GAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88524806|gb|CI453755.1|CI453755
genomic: GAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCNACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|86890189|gb|CI321366.1|CI321366
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATEST: gi|88273611|gb|CI394017.1|CI394017
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTA-GTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATTEST: gi|88275097|gb|CI395701.1|CI395701
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
EST: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATEST: gi|88462795|gb|CI519707.1|CI519707
genomic: ACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCA-Ggtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTAT
EST: AGACCGTTCTTCAG CTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
genomic: AGACCGTTCTTCAGgtaacaccta ... ctgttatcagCTGAGATCTAGTCGCAACTTCTGCATTGATATCGTCCTGCTCTGTGTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGACCGTTCTTCAGgtaacacctagcactaacttcccttggcatgcttggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcag
- - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA