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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGgtgagcttaccaatgcattccgtgttcggttaccgatgttgttatcggggccggttttataacatcaggcacattgagaaatgagaattcaccatcgctcgctggctctctctacag

Basic information

species Oryza sativa
transcript LOC_Os05g43300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43300.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G368410_T01 (Zea mays), 5'ss of exon 7
GCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGgtgagcttaccaatgcattccgtgttcggttaccgatgttgttatcggggccggttttataacatcaggcacattgagaaatgagaattcaccatcgctcgctggctctctctacag
|||| |||| |||||||| || || || || ||| |||||||||||| |||||||||||| || ||||||||| |||||||| ||  ||| |   | |||||||||   |  |       | || |    ||   |||     | |||  ||  ||| |  ||    |       ||   ||    |   || |||   | | || |          
GCTGCAGTCTCACAAGCGATTTGCTACGGCTTTCAACAGCTACTGCAGCCTCGTCGACAACGCCAGGCTCTACAGCACCAACACCTTGGGTGTTCCTAAGgtgagccagcttaa------cctggtgaactaagcatgacaaaa-cggaacca-tttcaggacgcatgaatttcagaacgatctctacagac-atcttgcacggggtag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682841|gb|CB679116.1|CB679116
EST:     TCGTCGACAATGCGAGGCTGTACTGCACCAACTCCACGGGCGCCGCCAAG                         CTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAA
genomic: TCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGgtgagcttac ... ctctctacagCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAA
EST: gi|29624215|gb|CB629226.1|CB629226
EST:     TCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAG                         CTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAA
genomic: TCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGgtgagcttac ... ctctctacagCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAA