1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATTATTAAATTTGATCTACTATTACGGGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAGgtgacttcagaagtcactattctcagcttgtcttcttccaattttatacattatggctttattcactgtcttactgatgcattttctgcag
species | Oryza sativa |
transcript | LOC_Os05g10740.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAG AAAGTGTGTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTGTEST: gi|9662820|gb|AU098292.1|AU098292
genomic: GGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAGgtgacttcag ... ttttctgcagAAAGTGTGTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTGT
EST: GAATGCTTGCTTTCAGCGGTACTTNCAGCAAG AAAGTGTTTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTGEST: gi|33797484|gb|CF324602.1|CF324602
genomic: GAATGCTTGC-TTCAGCGGTACTT-CAGCAAGgtgacttcag ... ttttctgcagAAAGTGTGTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTG
EST: GGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAG AAAGTGTGTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTGT
genomic: GGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAGgtgacttcag ... ttttctgcagAAAGTGTGTGGCAGTGGTCACTATCTTGAATCAGACATTGTACAAGCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTATTAAATTTGATCTACTATTACGGGACTCGAGGCTTGGTCAAGGAATGCTTGCTTCAGCGGTACTTCAGCAAGgtgacttcagaagtcactattctcagcttgtcttcttccaattttatacattatggctttattcactgtcttactgatgcattttctgcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG