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AGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtatgtgacttaattattatatgccattttccttaagctcattcagttataaacttatagtaatgctccttctggatgtaattgacaacacagc...
species | Oryza sativa |
transcript | LOC_Os04g09860.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGEST: gi|58678266|gb|CK066953.1|CK066953
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACEST: gi|29643625|gb|CB648632.1|CB648632
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCAC
EST: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAG GTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
genomic: CGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtat ... aaaagtgcagGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGgtattagtatgtgacttaattattatatgccattttccttaagctcattcagttataaacttatagtaatgctccttctggatgtaattgacaacacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc