1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatgatgtttccacacttcctgacttattaaataattattcttctgtttatcggaattatgctgtatacagaataagagttatttgtattggaca...
species | Oryza sativa |
transcript | LOC_Os03g64219.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|88840178|gb|CI079632.1|CI079632
genomic: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GAACGGGTAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|33681506|gb|CF309745.1|CF309745
genomic: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GAACGGGGAGTGGGGTGACCACGTTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|87019141|gb|CI297342.1|CI297342
genomic: GAACGGGGAGTGGGGTGACCACG-TTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|88842564|gb|CI081820.1|CI081820
genomic: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|86418296|gb|CI032505.1|CI032505
genomic: GGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTEST: gi|88840177|gb|CI079631.1|CI079631
genomic: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
EST: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
genomic: GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatga ... ttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaagatgatgtttccacacttcctgacttattaaataattattcttctgtttatcggaattatgctgtatacagaataagagttatttgtattggaca
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - CTGCAG