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GTTACTTGTACCTATAATTGTGCTGCAGAATCACAATCGGTACAACATTCTTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgattttcttgcatgaatacatctgttggttgctgaggccactgcaatttgtagcgatcttactggtttgttttacttcatgcactaattacag...
species | Oryza sativa |
transcript | LOC_Os03g19690.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGCAGGTCACAACTACCGCATAGATGTTCAAGCTATTGAAAGAGAG GTTAAAAGAATGGTTCATGCTGGCCAGGAGGTA-TAATEST: gi|88574253|gb|CI666022.1|CI666022
genomic: TTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgat ... tgtatttcagGTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAAT
EST: TTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAG GTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCAEST: gi|88353923|gb|CI634714.1|CI634714
genomic: TTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgat ... tgtatttcagGTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCA
EST: TTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAG GTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCAEST: gi|88298188|gb|CI558593.1|CI558593
genomic: TTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgat ... tgtatttcagGTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCA
EST: CAGCATAGATGTTCAAGCTATTGAAAGAGAG GTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCA
genomic: CAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgat ... tgtatttcagGTTAAAAGAATGGTTCATGCTGGGCAGGAGGTAATAATTATTTCTGGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTTGTACCTATAATTGTGCTGCAGAATCACAATCGGTACAACATTCTTCAAGCAGGTCACAACTACAGCATAGATGTTCAAGCTATTGAAAGAGAGgttcgttgattttcttgcatgaatacatctgttggttgctgaggccactgcaatttgtagcgatcttactggtttgttttacttcatgcactaattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA