1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGGTCACCTGAACAAGGGCAACGCCGAATCAGGCGTCCGTTCTCTGTTGCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgcttacttcactcatttgaccttacattttcataatttctgtttcttactgtatttctgtttcag
species | Oryza sativa |
transcript | LOC_Os03g16700.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTCEST: gi|38468421|gb|CF952552.1|CF952552
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTAEST: gi|29617377|gb|CB622389.1|CB622389
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTAEST: gi|86504415|gb|CI147048.1|CI147048
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTAEST: gi|33381803|gb|CF197146.1|CF197146
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTAEST: gi|29627496|gb|CB632507.1|CB632507
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
EST: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAG ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
genomic: GCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgct ... tctgtttcagATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGTCACCTGAACAAGGGCAACGCCGAATCAGGCGTCCGTTCTCTGTTGCCGAAGTGGAAGCCCTTGTGCTTGCAGTTGAAAAGCTTGGAACCGGAAGgtatgctgcttacttcactcatttgaccttacattttcataatttctgtttcttactgtatttctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG