1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCTGAGATTTACAACAATGACTTCACCACTCCTTTGCATGTAGTTATTGACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgttatcaaaatgccgtcttatgattcaaaatatcacagtggttctgagtttcattttattggacag
species | Oryza sativa |
transcript | LOC_Os02g38340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGEST: gi|86498887|gb|CI141520.1|CI141520
genomic: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
EST: GCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGEST: gi|27548806|gb|CA767552.2|CA767552
genomic: GCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
EST: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGEST: gi|218498722|gb|FG947457.1|FG947457
genomic: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
EST: AC-AGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGEST: gi|218491484|gb|FG957663.1|FG957663
genomic: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
EST: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGEST: gi|218485657|gb|FG944726.1|FG944726
genomic: ACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
EST: AGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAG AATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
genomic: AGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgtta ... tattggacagAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGAGATTTACAACAATGACTTCACCACTCCTTTGCATGTAGTTATTGACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGgtttgtgttatcaaaatgccgtcttatgattcaaaatatcacagtggttctgagtttcattttattggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG