1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcacttgttccaatcttttctactctatattcagactggccgtcaacaggccgccgccgtcctccgccgcttccgtcgccgcacgaagagacaccg...
species | Oryza sativa |
transcript | LOC_Os01g74650.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|701729|gb|D48020.1|D48020
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTNAG ATATCTAGTGATGAGGCTGTTTGAGACAGCAAAGCAATTGGCTCTTCCAGGEST: gi|86413547|gb|CI019132.1|CI019132
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTT-GAGACAGCAAAGCAATTGGCTCTTC-AGG
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29655936|gb|CB652211.1|CB652211
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|58691812|gb|CK080499.1|CK080499
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29616466|gb|CB621478.1|CB621478
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29663371|gb|CB659646.1|CB659646
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29687246|gb|CB683521.1|CB683521
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|163927355|gb|EG710663.1|EG710663
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|84117136|gb|CD150903.1|CD150903
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTTAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|33801701|gb|CF326722.1|CF326722
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|38480498|gb|CF964587.1|CF964587
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|86494722|gb|CI137355.1|CI137355
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29655935|gb|CB652210.1|CB652210
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|88847644|gb|CI018335.1|CI018335
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCGAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|38469869|gb|CF954000.1|CF954000
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29672976|gb|CB669251.1|CB669251
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29677863|gb|CB674138.1|CB674138
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|87008043|gb|CI297021.1|CI297021
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCEST: gi|58690422|gb|CK079109.1|CK079109
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGC
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|88845335|gb|CI084260.1|CI084260
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29616196|gb|CB621208.1|CB621208
genomic: GAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|58696201|gb|CK084888.1|CK084888
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|86535476|gb|CI175682.1|CI175682
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: CTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|38471318|gb|CF955449.1|CF955449
genomic: CTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTATTGATGAGGCTGTTGAGACAGCAAGAGCAATTGGCTCTTCAGGAEST: gi|88220621|gb|CI220181.1|CI220181
genomic: GTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAA-AGCAATTGGCTCTTCAGGA
EST: TGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29644300|gb|CB649307.1|CB649307
genomic: TGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|13420475|gb|AU174565.1|AU174565
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|300215770|gb|HO088396.1|HO088396
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGTGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|29684900|gb|CB681175.1|CB681175
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|86417511|gb|CI031720.1|CI031720
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: TCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAAEST: gi|88387705|gb|CI585408.1|CI585408
genomic: TCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
EST: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG ATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
genomic: GATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcactt ... attgttgcagATATCTAGTGATGAGGCTGTTGAGACAGCAAAGCAATTGGCTCTTCAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAGgtctgcacttgttccaatcttttctactctatattcagactggccgtcaacaggccgccgccgtcctccgccgcttccgtcgccgcacgaagagacaccg
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcgccg