1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGACTGATGCACGATGTGTAAGATGTGCAGAAAAGGAAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaatgttcctttcctttactttcaatccttggtcctttttttttactcaggagatatttgttttttttttaattttctggtcatacatattggt...
species | Oryza sativa |
transcript | LOC_Os01g34330.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGTA-GTGTATCTGATA-TATTCATGCTGGTCATGGAGATCGCTATCAG CTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATCEST: gi|58685641|gb|CK074328.1|CK074328
genomic: AAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaat ... ttgatttcagCTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATC
EST: AAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAG CTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATCEST: gi|86481379|gb|CI124012.1|CI124012
genomic: AAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaat ... ttgatttcagCTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATC
EST: AGTAGGTGTATCTGATATTAATTCATGCTGCTCATGGAGATCGCTATCAG CTCGAATGTAACGCCTGTGGACACTCGTGGTTTCTCGTCCAGAGATGCCATEST: gi|58690318|gb|CK079005.1|CK079005
genomic: AGTAGGTGTATCTGATATT-ATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaat ... ttgatttcagCTCGAATGTAACGCCTGTGGACACTCGTGG-TTCTCGTCCAGAGATGCCAT
EST: AAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAG CTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCGAGAGATGCCATCEST: gi|86478958|gb|CI121591.1|CI121591
genomic: AAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaat ... ttgatttcagCTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATC
EST: CATGCTGGTCATGGAGATCGCTATCAG CTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATC
genomic: CATGCTGGTCATGGAGATCGCTATCAGgtatgtaaat ... ttgatttcagCTCGAATGTAACGCCTGTGGACACTCGTGGTTCTCGTCCAGAGATGCCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACTGATGCACGATGTGTAAGATGTGCAGAAAAGGAAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAGgtatgtaaatgttcctttcctttactttcaatccttggtcctttttttttactcaggagatatttgttttttttttaattttctggtcatacatattggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC