1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAATACAGCTCCTGGAGAAAAGTACTCGTTGGCTTATAATCAGACTGCCTTCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacagaacccccatctctcgtcaagttaaaagtggtaatttcacaagtctctgtgctggaaaagatagtaatagaagaatttcagctgtcagggt...
species | Oryza sativa |
transcript | LOC_Os01g13280.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACAATGATGTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCEST: gi|86501896|gb|CI144529.1|CI144529
genomic: GGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
EST: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCEST: gi|33684996|gb|CF313235.1|CF313235
genomic: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
EST: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCEST: gi|7134643|gb|AU082600.1|AU082600
genomic: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
EST: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCEST: gi|89176090|gb|CI043111.1|CI043111
genomic: TCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
EST: GACAATGATGTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCEST: gi|27547810|gb|CA765888.2|CA765888
genomic: GACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
EST: GTATTCACTTCGGAAGCCTCCAAAG CATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
genomic: GTATTCACTTCGGAAGCCTCCAAAGgtaactacag ... ttcactgcagCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATACAGCTCCTGGAGAAAAGTACTCGTTGGCTTATAATCAGACTGCCTTCCTACTATCCTGCAGGACAATGATGTATTCACTTCGGAAGCCTCCAAAGgtaactacagaacccccatctctcgtcaagttaaaagtggtaatttcacaagtctctgtgctggaaaagatagtaatagaagaatttcagctgtcagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatc