1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAGgtaaatctactgacatacatgttatatatgtttttctactggacattggactccatcttatatccattgatgatgtcag
species | Oryza sativa |
transcript | LOC_Os01g01710.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG GGACTGGCCAGTTGACAAGTTGAAAGAAGTAAAAEST: gi|29620626|gb|CB625637.1|CB625637
genomic: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAGgtaaatctac ... atgatgtcagGGACTGGCCAGTTGACAAGTTGAAAGAAGTAAAA
EST: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG GGACTGGCCAGTTGACAAGTTGEST: gi|58694512|gb|CK083199.1|CK083199
genomic: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAGgtaaatctac ... atgatgtcagGGACTGGCCAGTTGACAAGTTG
EST: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG GGACTGGCCAGTTGACAAGTTGAAAGAAGTAAAAGTTGCTGATGCTTTAAA
genomic: GAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAGgtaaatctac ... atgatgtcagGGACTGGCCAGTTGACAAGTTGAAAGAAGTAAAAGTTGCTGATGCTTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAGgtaaatctactgacatacatgttatatatgtttttctactggacattggactccatcttatatccattgatgatgtcag
- - - - - - - - - AAGGAG
- - - - - - - - - - GGAGCA