1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTGCCATATATGTATTCTTCTCCCGTAGAAAGAAGGATAATACTGTCATGCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggtttttctgttccatcatcatcttaccaatgcagaagttaagactatttcatggttaaatgaacttgtcagtttctgtagaaatttgttttctgca...
species | Oryza sativa |
transcript | LOC_Os12g01510.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG GTGTGCCTTCTCTTGAGAGGACAGAGCTGGAGGCGGCATGCGAGGGTTTTAEST: gi|58609301|gb|CK037334.1|CK037334
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: GCCATGGACTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG GTGTGCGTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCAEST: gi|29621673|gb|CB626684.1|CB626684
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG GTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCAEST: gi|29623656|gb|CB628667.1|CB628667
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
EST: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAAGCATTTGTAACAG GTGTGCCTTCTCTEST: gi|11442867|gb|BF430766.1|BF430766
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCT
EST: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAG GTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGGTTCA
genomic: GCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggttttt ... ttgtgtgcagGTGTGCCTTCTCTTGAGAGGACAGAACTGGAGGCGGCATGCGAGGGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGCCATATATGTATTCTTCTCCCGTAGAAAGAAGGATAATACTGTCATGCCATGGGCTACAGGGCTGAGTGGACAGCTAAAGAAGGCATTTGTAACAGgttggtttttctgttccatcatcatcttaccaatgcagaagttaagactatttcatggttaaatgaacttgtcagtttctgtagaaatttgttttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG