1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTACCTCCAAAGACAATTAATCTGGATAAAGTAGATTTTACAAAAGAGGAGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAGgttggttaaattttaaagtcaaacttttctgtggacggcctccgtatagtgtagatttgtgttgcatctggtattccgaattctagtcatgaaatgccat...
species | Oryza sativa |
transcript | LOC_Os08g08220.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAG GCATACGCTGCTGCTGGTACACTCAAACAGAACTATGCCAACATTCTTCTAEST: gi|58655156|gb|CK043836.1|CK043836
genomic: AGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAGgttggttaaa ... tccatttcagGCATACGCTGCTGCTGGTACACTCAAACAGAACTATGCCAACATTCTTCTA
EST: AGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAG GCATACGCTGCTGCTGGTACACTCAAACAGAACTATGCCAACATTCTTCTA
genomic: AGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAGgttggttaaa ... tccatttcagGCATACGCTGCTGCTGGTACACTCAAACAGAACTATGCCAACATTCTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACCTCCAAAGACAATTAATCTGGATAAAGTAGATTTTACAAAAGAGGAGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCGCGGCAACAGTTCAAGgttggttaaattttaaagtcaaacttttctgtggacggcctccgtatagtgtagatttgtgttgcatctggtattccgaattctagtcatgaaatgccat
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctccg