1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCTGAGACATCCACCAGGGAAGTTCAAAATGATAAGGCAACAATATCAAATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacctttgtagtatttcgttttagttaggtttctatttttgatttatccttttctttaatgtgctatcctgtttctttaacaagaaactcacttacattcag
species | Oryza sativa |
transcript | LOC_Os08g06110.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29613821|gb|CB618834.1|CB618834
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|13904796|gb|BF889434.1|BF889434
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29629255|gb|CB634266.1|CB634266
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAATTTGCTCCGAAGTTCTTEST: gi|58663892|gb|CK052578.1|CK052578
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29674993|gb|CB671268.1|CB671268
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29624811|gb|CB629822.1|CB629822
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29623819|gb|CB628830.1|CB628830
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|88307208|gb|CI640647.1|CI640647
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|14713755|gb|AU197723.1|AU197723
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|58672987|gb|CK061673.1|CK061673
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29637151|gb|CB642160.1|CB642160
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29612984|gb|CB617997.1|CB617997
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29613167|gb|CB618180.1|CB618180
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29676888|gb|CB673163.1|CB673163
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|58663489|gb|CK052175.1|CK052175
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29615308|gb|CB620320.1|CB620320
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|58604509|gb|CK015037.1|CK015037
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: GCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29622092|gb|CB627103.1|CB627103
genomic: GCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|58605207|gb|CK033240.1|CK033240
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGEST: gi|58669379|gb|CK058065.1|CK058065
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTG
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29630692|gb|CB635701.1|CB635701
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29613863|gb|CB618876.1|CB618876
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29677549|gb|CB673824.1|CB673824
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: CACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29677851|gb|CB674126.1|CB674126
genomic: CACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTEST: gi|29628510|gb|CB633521.1|CB633521
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
EST: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAG AAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
genomic: ATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacct ... ttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGAGACATCCACCAGGGAAGTTCAAAATGATAAGGCAACAATATCAAATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGgtacatacctttgtagtatttcgttttagttaggtttctatttttgatttatccttttctttaatgtgctatcctgtttctttaacaagaaactcacttacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC