1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAGgtataacctttctacgatttctcaatgattttatgttccattgtcaggatggtcctgagttctgttattaattcttagcttacaatatctatgcaaacgtttatatttttattccatag
species | Oryza sativa |
transcript | LOC_Os07g32400.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGATGTGAAG GTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAATACAATGTCAAGGAGAEST: gi|58665909|gb|CK054595.1|CK054595
genomic: GAGATGTGAAGgtataacctt ... tattccatagGTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGA
EST: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAG GTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGAEST: gi|33796927|gb|CF324327.1|CF324327
genomic: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAGgtataacctt ... tattccatagGTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGA
EST: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAG GTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGAEST: gi|58669013|gb|CK057699.1|CK057699
genomic: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAGgtataacctt ... tattccatagGTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGA
EST: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAG GTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGA
genomic: CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAGgtataacctt ... tattccatagGTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCAAATATCCTCCTGACTGAAAGTGGAGATGTGAAGgtataacctttctacgatttctcaatgattttatgttccattgtcaggatggtcctgagttctgttattaattcttagcttacaatatctatgcaaacgtttatatttttattccatag
- - - - - - - - - - - AGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - GAGATG