1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
CTTGTAACATACTTCTCAGAGAGAATGATATCGCCAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatggatgcatttccgtagatctgctttggatacaacatctttgtgttagcattgtaagtacattttgtttgcag
species | Oryza sativa |
transcript | LOC_Os06g45980.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAAACACTTCGGAGAAACCGCGTAATGCAGCGTAACTGGAGTAATAAG ATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAAEST: gi|112786293|gb|EE590472.1|EE590472
genomic: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatgg ... ttgtttgcagATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAA
EST: CAGAAACACTTCGGAGAAACCGCGTAATGCAGCGTAACTGGAGTAATAAG ATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAAEST: gi|29634428|gb|CB639437.1|CB639437
genomic: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatgg ... ttgtttgcagATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAA
EST: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAG ATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAAEST: gi|58685859|gb|CK074546.1|CK074546
genomic: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatgg ... ttgtttgcagATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAA
EST: AGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAAGTAAG ATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAEST: gi|5005200|gb|AU070362.1|AU070362
genomic: AGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAA-TAAGgtatagatgg ... ttgtttgcagATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAA
EST: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAG ATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAA
genomic: CAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatgg ... ttgtttgcagATAGTTATTGCTTTCACCTACAGGCGTGATGGGGTCCTCGTTGGCTGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTAACATACTTCTCAGAGAGAATGATATCGCCAGAAACACTTCGGAGAAACAGCGTAATGCAGCGTAACTGGAGTAATAAGgtatagatggatgcatttccgtagatctgctttggatacaacatctttgtgttagcattgtaagtacattttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA