1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctccaatagccatggattcctcttctgcaattgtgcaatatccagcaatgcttagtttatttatctcttatttatatggtgtactgatgaatgtag
species | Oryza sativa |
transcript | LOC_Os05g48020.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|27548352|gb|CA767492.2|CA767492
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAGGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|88962991|gb|CI025477.1|CI025477
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|29656422|gb|CB652697.1|CB652697
genomic: GGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|33802714|gb|CF327228.1|CF327228
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: TGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|86539748|gb|CI179954.1|CI179954
genomic: TGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: ATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|33804306|gb|CF328027.1|CF328027
genomic: ATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: ATGAGGAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|8858653|gb|AU095971.1|AU095971
genomic: ATGAGGAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|89181470|gb|CI112976.1|CI112976
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: AACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|86870133|gb|CI318049.1|CI318049
genomic: AACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACT-GATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|86869693|gb|CI322179.1|CI322179
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: ATAGGCAAGTTCCCGTGATGGATGAAATGGACGAGAAG GTGGATAGACCCAACACAGATGGGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|88206035|gb|CI205884.1|CI205884
genomic: ATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: TGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCTACGTCAGACTAAAAGAGEST: gi|86869435|gb|CI346295.1|CI346295
genomic: TGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: AAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|88836744|gb|CI014745.1|CI014745
genomic: AAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|27576795|gb|CA999489.1|CA999489
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAEST: gi|58684769|gb|CK073456.1|CK073456
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCA
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|218478791|gb|FG960302.1|FG960302
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|88263973|gb|CI367747.1|CI367747
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GGATGAAATGGACGAGAAG GTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAGEST: gi|86890189|gb|CI321366.1|CI321366
genomic: GGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
EST: GAACTGGATAGCCAAGTTCCCTTGATGGATGAAATGGACGAGAAG GT-GATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
genomic: GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctc ... atgaatgtagGTGGATAGAGCCAACACAGATTTGAAGAATACCAACGTCAGACTAAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTGGATAGGCAAGTTCCCTTGATGGATGAAATGGACGAGAAGgttggttctccaatagccatggattcctcttctgcaattgtgcaatatccagcaatgcttagtttatttatctcttatttatatggtgtactgatgaatgtag
- - - - - - - - - - - GATGGA