1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttcagaacttaatcctactccactacatgtctacattactgatactatgcttgttcatattactcaaacaaattctgcttgatcttgcctgttt...
species | Oryza sativa |
transcript | LOC_Os05g43300.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAG GAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCEST: gi|88353182|gb|CI654448.1|CI654448
genomic: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttca ... acattgtcagGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTC
EST: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAG GAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCEST: gi|88344019|gb|CI638754.1|CI638754
genomic: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttca ... acattgtcagGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTC
EST: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAG GAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGEST: gi|29682841|gb|CB679116.1|CB679116
genomic: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttca ... acattgtcagGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTG
EST: TCAGGGGAATCAG GAGAGCTGTGATCACC-GGACGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTEST: gi|29624215|gb|CB629226.1|CB629226
genomic: TCAGGGGAATCAGgtatgcttca ... acattgtcagGAGAGCTGTGATCACCGGGA-GAGCAGTGAGGGTGAAGTCCCAGCTGAAGT
EST: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAG GAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTC
genomic: CTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttca ... acattgtcagGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGgtatgcttcagaacttaatcctactccactacatgtctacattactgatactatgcttgttcatattactcaaacaaattctgcttgatcttgcctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa