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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATACTTGTTTTTGCTTCTGTTATGGCAACGCTTGGCCTTCAAATTATCCTAGAATCTACACGCTCATTGTTTTATGATgtaagtcttttcttttctcttcttaccattctttgactgcttttttcaatacaattatttgattcatattgattagcgtagttggtttttcacttctcta...

Basic information

species Oryza sativa
transcript LOC_Os05g38670.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38670.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv13s0019g00020.t01 (Vitis vinifera), 5'ss of exon 4
GGAATACTTGTTTTTGCTTCTGTTATGGCAACGCTTGGCCTTCAAATTATCCTAGAATCTACACGCTCATTGTTTTATGATgtaagtcttttcttttctcttcttaccattctttgactg--cttttttca---atacaatta--tttgattcatat-tgattagcgtagt--tggtttttcacttctc-ta----------------------
||||| |||||||||||||||||||||||||| || || || || || ||| | || ||   |||| || | |  | ||| ||||||   |  | |  |    |||  | | |  ||  |  | |||||||   ||  | ||   ||| |||||| | |||  |  | | |  ||||| |  |  | || ||                      
GGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGACgtaagtggctgatctaattcaattattagtgtaagaaggaacctttttcatagatgaattttactttaattcatttgtgaacaatgaactaatggttatcaatctgtcatataaataatgtgtcctttcccag

upper sequence: LOC_Os05g38670.1 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S119_25V6.1 (Physcomitrella patens), 5'ss of exon 3
GGAATACTTGTTTTTGCTTCTGTTATGGCAACGCTTGGCCTTCAAATTATCCTAGAATCTACACGCTCATTGTTTT-------ATGATgtaagtcttt--tcttttctcttcttaccattctttgactgc--ttttttcaatacaattatttgattcatatt----gattagcgtagttggtttttcacttctcta----------------------------------------------
|| || || |||||||| || || |||||||| |||||||||||||||||  | || ||  | ||  |  |||| |       | || | |   | ||  | |||||| || || |   |     | |||    |||||     |||  |    || |||       |||     ||||     |  ||    |                                                
GGCATTCTAGTTTTTGCGTCAGTAATGGCAACACTTGGCCTTCAAATTATTTTGGAGTCCGCTCGGACGCTGTTCTCACAGGCAGGACGAACAACCTTGgtgttttctattgttgcagatgcgaaattgcgacgttttcggattaatggtccttttaataactccaaattcttacagttctacctggacactccagactattttggtccttcacatggaaatttcatcggacggttgcgcag

upper sequence: LOC_Os05g38670.1 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S11_299V6.3 (Physcomitrella patens), 5'ss of exon 5
GGAATACTTGTTTTTGCTTCTGTTATGGCAACGCTTGGCCTTCAAATTATCCTAGAATCTACACGCTCATTGTTTTATGATgtaagtcttttcttttctcttcttaccattctttgactgcttttttcaatacaattatttgattcata-ttgattagcgtagttggtttttcacttctcta----------------------
|| || || ||||||||||| || |||||||| ||||| |||||||| || ||||||||   |||  |  |  |   | | ||||| |       |      |||   |  ||    ||||||   |      |||||||  |||| || ||  || |  |  || |  || |   |  | |                      
GGTATTCTGGTTTTTGCTTCAGTAATGGCAACACTTGGTCTTCAAATCATTCTAGAATCCGTACGGACTCTAATCACTCAGgtaagacacacacataggtcactttatagcct----ctgcttcgctatggttaattattctattcttaatttgttggaatgttttggattacttataacgaaaatgaaatttttgacttacag