1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGTGAGCGTCAAGCTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatactgaagttatgcctatgttctgtattaagagtttcttcaagtggattgaatttgttgccaacatcattgcacttctaatgactacgttcattgcagtcttaatctactacaggcttatgtttaatttccttagattttgttttcgataatgattggtagcttatgtttgtag
species | Oryza sativa |
transcript | LOC_Os03g17930.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTT GCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCAEST: gi|40490411|gb|BX899913.1|BX899913
genomic: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatact ... atgtttgtagGCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
EST: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTT GCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCAEST: gi|38479504|gb|CF963613.1|CF963613
genomic: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatact ... atgtttgtagGCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
EST: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTT GCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCAEST: gi|2431215|gb|C73635.1|C73635
genomic: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatact ... atgtttgtagGCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
EST: -TTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTT GCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCAEST: gi|29639434|gb|CB644443.1|CB644443
genomic: CTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatact ... atgtttgtagGCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
EST: GCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTT GCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
genomic: GCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatact ... atgtttgtagGCTGAGAAGTAAACTCAAAGACCTTGCAGATCAATATAATATCACACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGAGCGTCAAGCTTGACGAGCAGAAAAATGAATGCATTGCTCAGTTAGAAGAGAACAACTTgtaagatactgaagttatgcctatgttctgtattaagagtttcttcaagtggattgaatttgttgccaacatcattgcacttctaatgactacgttcattgcagtcttaatctactacaggcttatgtttaatttccttagattttgttttcgataatgattggtagcttatgtttgtag
- - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA