1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACATTATCAATTGGCTCAGTGCTCCTACAGCAAGCTGCTATCCAGGCCTCGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGgtaataggcttttccatgtaactcttaattcaccatataaatatgccttctaaaaccaccagatacagaacatcatgtgcaataaacattgtatattcta...
species | Oryza sativa |
transcript | LOC_Os03g02690.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTTCCACTACAACAGCGTCGAGATAGTGGAATCAAGACCTAACCCATCG GATTTGCCATCACAAGACGCAATACAGATTGCAAATAATATAACAGATCTTEST: gi|29684781|gb|CB681056.1|CB681056
genomic: CGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGgtaataggct ... aaattgacagGATTTGCCATCGCAAGATGCAATACAGATTGCAAATAATATAACAGATCTT
EST: CGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCG GATTTGCCATCGCAAGATGCAATACAGATTGCAAATAATATAACAGATCTTEST: gi|29684782|gb|CB681057.1|CB681057
genomic: CGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGgtaataggct ... aaattgacagGATTTGCCATCGCAAGATGCAATACAGATTGCAAATAATATAACAGATCTT
EST: CGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCG GATTTGCCATCGCAAGATGCAATACAGATTGCAAATAATATAACAGATCTT
genomic: CGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGgtaataggct ... aaattgacagGATTTGCCATCGCAAGATGCAATACAGATTGCAAATAATATAACAGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATTATCAATTGGCTCAGTGCTCCTACAGCAAGCTGCTATCCAGGCCTCGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGgtaataggcttttccatgtaactcttaattcaccatataaatatgccttctaaaaccaccagatacagaacatcatgtgcaataaacattgtatattcta
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