1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATTGACCCAAGTGTTACCATGATGACAGTTGAGGAAAAACCTGATGTGACATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGgtatactaatcttttttcagttcatatcccttgtcgtgcaaacttgctcatccttgtgcatcaggctagttagttttggacttattttgctatttactgtttgctaattattgtttgttcatag
species | Oryza sativa |
transcript | LOC_Os02g54340.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAG GTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATTEST: gi|58685776|gb|CK074463.1|CK074463
genomic: CATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGgtatactaat ... ttgttcatagGTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATT
EST: CATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAG GTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATTEST: gi|58600395|gb|CK010923.1|CK010923
genomic: CATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGgtatactaat ... ttgttcatagGTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATT
EST: GATTGAAAAAATGCGGGAG GTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATT
genomic: GATTGAAAAAATGCGGGAGgtatactaat ... ttgttcatagGTTGTTGAGCTTCCCATGCTTCACCCAGAGAAGTTTGTCAAGCTTGGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGACCCAAGTGTTACCATGATGACAGTTGAGGAAAAACCTGATGTGACATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGgtatactaatcttttttcagttcatatcccttgtcgtgcaaacttgctcatccttgtgcatcaggctagttagttttggacttattttgctatttactgtttgctaattattgtttgttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA