1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCACGCATCGCACTCAATGATATTGATGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtcccttgcccactcaattggctattaagtttcttcattggaagtttatatattttgtgttcataaatctag
species | Oryza sativa |
transcript | LOC_Os02g52360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATG GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGEST: gi|86500986|gb|CI143619.1|CI143619
genomic: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtccct ... ataaatctagGAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG
EST: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGTCAAACGATG GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGEST: gi|58652761|gb|CK041441.1|CK041441
genomic: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtccct ... ataaatctagGAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG
EST: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATG GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG
genomic: TGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtccct ... ataaatctagGAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGCATCGCACTCAATGATATTGATGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtcccttgcccactcaattggctattaagtttcttcattggaagtttatatattttgtgttcataaatctag
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG