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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCAAGTTGACAGACGATGGACTTCAAGAAGTGCTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAGgtaatattggaaaaagcaaatgatgtttatatgcgaactcgagtgtctattatctatcatcctacttcacatcctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g17990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17990.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G055705_T01 (Zea mays), 5'ss of exon 7
GTGCATCAAGTTGACAGACGATGGACTTCAAGAAGTGCTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAGgtaa-tattggaaaaagcaa-atgat-gtttatatgcgaactcgagtgtctattatctatcatcctacttcacatcc-tgcag
|||  | ||||||||||| ||||| ||| |  |||| |||| ||| |||||||| ||||||||| | |||||||||||||| ||||||||| ||   ||||||  || || || |   || ||   |  || | |     |||||| || | ||| |||  | | |||||
GTGTGTTAAGTTGACAGATGATGGGCTTAACCAAGTTCTTCTGAAGTGTTCTTCACTTGAAAGCCTAAACCTTTATGCCCTTTCAAGgtaaatacaagaaaaaataatattatagcagatgtgtctagccgtgaggagggtatctaacaacttacctcattttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668215|gb|CB664490.1|CB664490
EST:     CTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAG                         TTTTAGCGACAAGGTTTATAAGAAGATAGGATCTTTAACTAACCTTACATT
genomic: CTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAGgtaatattgg ... catcctgcagTTTTAGCGACAAGGTTTATAAGAAGATAGGATCTTTAACTAACCTTACATT
EST: gi|29668175|gb|CB664450.1|CB664450
EST:     CTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAG                         TTTTAGCGACAAGGTTTATAAGAAGATAGGATCTTTAACTAACCTTACATT
genomic: CTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAGgtaatattgg ... catcctgcagTTTTAGCGACAAGGTTTATAAGAAGATAGGATCTTTAACTAACCTTACATT