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GCAGCCATTGTTGGACCAGGGAATGAATTGGGAAAACCTATCGATATTAATGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattcttttcagttttcgttcagatcagttgcatactttggttaaactgagttttgtataatattgcag
species | Oryza sativa |
transcript | LOC_Os02g10310.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|29657905|gb|CB654180.1|CB654180
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATCTTGGGCCTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|29671043|gb|CB667318.1|CB667318
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: CTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|163929432|gb|EG713401.1|EG713401
genomic: CTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|117232667|gb|CT861058.1|CT861058
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|29672144|gb|CB668419.1|CB668419
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|88691997|gb|CI735572.1|CI735572
genomic: TAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: GAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|88324389|gb|CI566202.1|CI566202
genomic: GAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTG CCAGCAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGEST: gi|29664840|gb|CB661115.1|CB661115
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAG-AGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGG
EST: TAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|88690598|gb|CI734677.1|CI734677
genomic: TAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: GAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|27548667|gb|CA766758.2|CA766758
genomic: GAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTG CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
genomic: TGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattc ... aatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCCATTGTTGGACCAGGGAATGAATTGGGAAAACCTATCGATATTAATGATGCTGAAGAACATATCTTTGGCCTAATGATAATGAATGATTGGAGTGgtaggtattcttttcagttttcgttcagatcagttgcatactttggttaaactgagttttgtataatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG