1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctacttcaatagaactacgtagtgaggcagtgttacttcctttgtagtttctgaacactgtttatatgtgttatcttgtag
species | Oryza sativa |
transcript | LOC_Os01g70920.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTEST: gi|88842698|gb|CI081954.1|CI081954
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: CAATACCCTTTGCAAGATNACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACNATCTGTGTEST: gi|300216040|gb|HO088666.1|HO088666
genomic: CAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGTEST: gi|86414242|gb|CI068645.1|CI068645
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACNATCTGTGTEST: gi|29656964|gb|CB653239.1|CB653239
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTEST: gi|25806675|gb|CA762636.1|CA762636
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG GTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctacttcaatagaactacgtagtgaggcagtgttacttcctttgtagtttctgaacactgtttatatgtgttatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA