1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGAATGTTTTCTTTTGCTGATCCTACTGGTAAAAGAACTGCATGGGTATCACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactcttatatacttttgcctcccttatttttctgaaaaaaaatacttatgagacttgcattttag
species | Oryza sativa |
transcript | LOC_Os01g34390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|87015378|gb|CI275568.1|CI275568
genomic: GAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTGTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|86495670|gb|CI138303.1|CI138303
genomic: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: GCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|86492621|gb|CI135254.1|CI135254
genomic: GCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: TGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|86505729|gb|CI148362.1|CI148362
genomic: TGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: GCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|87021724|gb|CI276123.1|CI276123
genomic: GCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|218501085|gb|FG955422.1|FG955422
genomic: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|87021752|gb|CI276151.1|CI276151
genomic: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: AGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|29662700|gb|CB658975.1|CB658975
genomic: AGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|87015246|gb|CI275436.1|CI275436
genomic: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGGEST: gi|88829466|gb|CI074336.1|CI074336
genomic: ACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
EST: CATGCTGCCCTTGGGATTTTTTGCATACAACT GGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
genomic: CATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactc ... tgcattttagGGGGTCTCACATCTGAGTGGTTCAGTCTTGAAGCATCACTTCTAACTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAATGTTTTCTTTTGCTGATCCTACTGGTAAAAGAACTGCATGGGTATCACTCAGAAATTGTCTATACATGCTGCCCTTGGGATTTTTTGCATACAACTgtaagtactcttatatacttttgcctcccttatttttctgaaaaaaaatacttatgagacttgcattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC