1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATCTATTGTTGCTCTTACACTAAATTATAAAATGGCAAGGAAAAACCGGATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtggatgcttcttttgacattgtttcgagtataggacgagctggagcagtcatatgagatgcacaaggaaattttatagctggttcttgcag
species | Oryza sativa |
transcript | LOC_Os01g25530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|88485099|gb|CI422370.1|CI422370
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|25803239|gb|CA759200.1|CA759200
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAGEST: gi|58665569|gb|CK054255.1|CK054255
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|88285004|gb|CI502341.1|CI502341
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: CTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|88434423|gb|CI501849.1|CI501849
genomic: CTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: GGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|89172108|gb|CI721167.1|CI721167
genomic: GGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAAEST: gi|29679997|gb|CB676272.1|CB676272
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
EST: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAG GCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
genomic: ATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtgg ... gttcttgcagGCACTTGCCTCATGTTGCTGATGCAACGATGGCAGAAGCCTACGCCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTATTGTTGCTCTTACACTAAATTATAAAATGGCAAGGAAAAACCGGATGCAAAACCACGGAAAGGGTGGCATAAACCGCCTAAAGGAATTCTCAAGgtaaatgtggatgcttcttttgacattgtttcgagtataggacgagctggagcagtcatatgagatgcacaaggaaattttatagctggttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA