1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctcactcgcactaacttgaagcttagcttggactaattgtgccacaattatgttttgttggttattatcttttcacttctggaaaatgtgcag
species | Oryza sativa |
transcript | LOC_Os12g40550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGTEST: gi|33797319|gb|CF324522.1|CF324522
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGTEST: gi|33799214|gb|CF325465.1|CF325465
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGTEST: gi|58656010|gb|CK044690.1|CK044690
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGTEST: gi|25801425|gb|CA757386.1|CA757386
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGTEST: gi|32948123|gb|BP184695.1|BP184695
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
EST: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG CCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
genomic: ATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctc ... aaatgtgcagCCGCCTAATGGCAGGGAGTGAAGAACTGGCTCGATCCCTCAAAGAAACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAGgttgagcctcactcgcactaacttgaagcttagcttggactaattgtgccacaattatgttttgttggttattatcttttcacttctggaaaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT