1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattctatataaacataaattctgatttattggcatatctttgacacagcaagttataaacagtacgggattcggaattctactgtaggtattga...
species | Oryza sativa |
transcript | LOC_Os11g34300.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|9865404|gb|AU101154.1|AU101154
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|86539094|gb|CI179300.1|CI179300
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|58679417|gb|CK068104.1|CK068104
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|88983252|gb|CI020816.1|CI020816
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|86870999|gb|CI326818.1|CI326818
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: TGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|89173985|gb|CI041878.1|CI041878
genomic: TGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|29665212|gb|CB661487.1|CB661487
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|13165184|gb|AU173981.1|AU173981
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GAAGGATANCAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
genomic: GAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattctatataaacataaattctgatttattggcatatctttgacacagcaagttataaacagtacgggattcggaattctactgtaggtattga
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG