1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaatctttcttgattttattgttgtacatcactatagcagcatattcatttcccatcaatatacacaaatatgtgaagtcagttagcaccttca...
species | Oryza sativa |
transcript | LOC_Os11g34300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAGATGCACTCAACCAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|86844258|gb|CI337629.1|CI337629
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|109712745|gb|CI105353.1|CI105353
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|58679417|gb|CK068104.1|CK068104
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|88491380|gb|CI428652.1|CI428652
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|86539094|gb|CI179300.1|CI179300
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|66914665|gb|CX101513.1|CX101513
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|88983252|gb|CI020816.1|CI020816
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGGGTCCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|86844406|gb|CI337712.1|CI337712
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|88288783|gb|CI517914.1|CI517914
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|86870999|gb|CI326818.1|CI326818
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|15858178|gb|BI810990.1|BI810990
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: AAGAAGATGCACTCAACAAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|89173985|gb|CI041878.1|CI041878
genomic: AAGAAGATGCACTCAAC-AAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|86867570|gb|CI337935.1|CI337935
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|13165184|gb|AU173981.1|AU173981
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCNCTCAACAAACTACAGCAGAAATTGCTGGACATTNTCAA GTTTNTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|88476535|gb|CI413806.1|CI413806
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGEST: gi|88830125|gb|CI074797.1|CI074797
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
EST: GAAGAAGATGCACTCAACAAAGTACAGCAGAAATTGCTGGACATTCTCAA GTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
genomic: GAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaat ... ttcatggtagGTTTCTGCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAgtaagcaaatctttcttgattttattgttgtacatcactatagcagcatattcatttcccatcaatatacacaaatatgtgaagtcagttagcaccttca
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA