1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCCTCTCGTTTGTTAGCTCGGAAGCTGAAGGTTGAAGGTTATATGCAGATTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAACgtaagtctgctgcactcagtttattctcaatgttttcactttatagttcgaaagtttaacacaatctgtttttgttaaatag
species | Oryza sativa |
transcript | LOC_Os10g37520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAAC TTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGCEST: gi|7134671|gb|AU082614.1|AU082614
genomic: TTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAACgtaagtctgc ... tgttaaatagTTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGC
EST: TGTTGTCACTAAC TTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGCEST: gi|58599888|gb|CK010416.1|CK010416
genomic: TGTTGTCACTAACgtaagtctgc ... tgttaaatagTTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGC
EST: TTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAAC TTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGC
genomic: TTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAACgtaagtctgc ... tgttaaatagTTCCTAGTACCTCCCTCCTCGGTCAAAGGTGGTGGCATCTCATTTGGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCTCTCGTTTGTTAGCTCGGAAGCTGAAGGTTGAAGGTTATATGCAGATTGTGTTTTCGATATCAGCTTTTACTCTTTTCCTCCCTGTTGTCACTAACgtaagtctgctgcactcagtttattctcaatgttttcactttatagttcgaaagtttaacacaatctgtttttgttaaatag
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