1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatctgtcttcttgtagggttgatttctggaattatatctcagtgtaatgatatagttcaattaagcccactttttatggtatactaggttagtgtccgactagactgatggtctagtttcttgttgaaaggttgatacagtatgcattttctattctgacatgactgtatctttaccag
species | Oryza sativa |
transcript | LOC_Os09g29470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCGTGGAAGTGGAG GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACEST: gi|29623683|gb|CB628694.1|CB628694
genomic: CCCGTGGAAGTGGAGgtaaagcatc ... tctttaccagGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCAC
EST: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAG GTCCAAACAATCTTTAEST: gi|29637839|gb|CB642848.1|CB642848
genomic: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatc ... tctttaccagGTCCAAACAATCTTTA
EST: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAG GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACEST: gi|58673945|gb|CK062631.1|CK062631
genomic: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatc ... tctttaccagGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCAC
EST: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAG GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCCTTTACAAGATATCCAEST: gi|58689151|gb|CK077838.1|CK077838
genomic: CAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatc ... tctttaccagGTCCAAACAATCTTTATCCAGAAGATCTGATTCCC-TTTACAAGATATCCA
EST: TCATCTATGGCTTGGTCCCCGTGGAAGTGGAG GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCAC
genomic: TCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatc ... tctttaccagGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGgtaaagcatctgtcttcttgtagggttgatttctggaattatatctcagtgtaatgatatagttcaattaagcccactttttatggtatactaggttagtgtccgactagactgatggtctagtttcttgttgaaaggttgatacagtatgcattttctattctgacatgactgtatctttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG