1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatatttttaagaattatcaataaaaagtgttgatcacatttttcttccttagcagtagtagatattgaccctgtttacttaatttacag
species | Oryza sativa |
transcript | LOC_Os08g41950.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAG GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGEST: gi|2799584|gb|AA752573.1|AA752573
genomic: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatattttt ... taatttacagGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAG
EST: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAG GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAEST: gi|40491399|gb|BX901494.1|BX901494
genomic: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatattttt ... taatttacagGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA
EST: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAG GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAEST: gi|15847472|gb|BI795748.1|BI795748
genomic: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatattttt ... taatttacagGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA
EST: ACAAAACATCTGCCTGACC-ACTGACGGAGCTTCAGAGAAAGG GAACAAATGGTTTCTGAA-C-AATAGATGCCTTAGGAGAAAAEST: gi|24208827|gb|AU225854.1|AU225854
genomic: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAA-Ggtatattttt ... taatttacagGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA
EST: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAG GAACAAATGGTTTCTGAAGCAAATAGATGCCTTATGAGAA
genomic: ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatattttt ... taatttacagGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGgtatatttttaagaattatcaataaaaagtgttgatcacatttttcttccttagcagtagtagatattgaccctgtttacttaatttacag
- - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - GAGCTT