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AACCAAATGTGCCCCCTGAAAATTCAGTTACTTCAACTGGTGAAGAACAGCTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgattatgtggaacatcactattgtattttttagttacagcaacatgatgtagttatgataatccagtgcaaggccagtggttacttgtttttt...
species | Oryza sativa |
transcript | LOC_Os08g25060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAG TGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGAEST: gi|5004205|gb|AU069354.1|AU069354
genomic: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgat ... gtcttcacagTGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGA
EST: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAG TGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGAEST: gi|13919362|gb|AU183605.1|AU183605
genomic: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgat ... gtcttcacagTGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGA
EST: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAG TGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGAEST: gi|33678004|gb|CF306243.1|CF306243
genomic: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgat ... gtcttcacagTGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGA
EST: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAG TGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGA
genomic: CTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgat ... gtcttcacagTGAATTGCAGAAGTTACATATGAAGTTTGTTCTTGGCAATATTCTGCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCAAATGTGCCCCCTGAAAATTCAGTTACTTCAACTGGTGAAGAACAGCTTAGTGCTGCAGAAATGCAACGTCGGATGAAATTGCTGCAAGAAGATAGgtaatgtgattatgtggaacatcactattgtattttttagttacagcaacatgatgtagttatgataatccagtgcaaggccagtggttacttgtttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG