1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtactactaaccgttttttattcatgcagcggcacattgctattttgctcgaataaagaaaatgtgatttttttttatctcgggggaatatcggat...
species | Oryza sativa |
transcript | LOC_Os07g11110.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|86503189|gb|CI145822.1|CI145822
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|88217622|gb|CI217471.1|CI217471
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|86865563|gb|CI330982.1|CI330982
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: GCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCTGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|38470717|gb|CF954848.1|CF954848
genomic: GCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|44674226|gb|CR287660.1|CR287660
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: AGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|87011450|gb|CI279359.1|CI279359
genomic: AGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|88511963|gb|CI439469.1|CI439469
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCAAGAAGGCCTTCCCCTTCCGCAACATT CACTTTTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGANGAGCEST: gi|88994320|gb|CI117274.1|CI117274
genomic: CCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGCCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|86854089|gb|CI252080.1|CI252080
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCEST: gi|88509520|gb|CI437026.1|CI437026
genomic: CCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
EST: CCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATG CANTTTTACNCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
genomic: CCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtacta ... aaattgttagCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGgttagtactactaaccgttttttattcatgcagcggcacattgctattttgctcgaataaagaaaatgtgatttttttttatctcgggggaatatcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcgg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcggggg