1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AAGGAGAAGAAGATTCTCTCCATTCGGGATAGGGGTATTGGTATGACCAAGGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcctttgtactgatttctcttaaagttatgtgtattctcttgctaaaactttagtattatctatttgtttgtaaagagaattttaccaagtgccatttaacttaaacttgagtgataccaattccttgaaatttttgcag
species | Oryza sativa |
transcript | LOC_Os06g50300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAATEST: gi|702048|gb|D48339.1|D48339
genomic: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
EST: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAATEST: gi|29635203|gb|CB640212.1|CB640212
genomic: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
EST: GGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAATEST: gi|5803546|gb|AI978516.1|AI978516
genomic: GGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
EST: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAATEST: gi|29633964|gb|CB638973.1|CB638973
genomic: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
EST: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAATEST: gi|29622518|gb|CB627529.1|CB627529
genomic: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
EST: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAG CTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
genomic: GGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcc ... atttttgcagCTTTTGTGGAAAAGATGCAGACTGGGGGTGACCTCAATCTCATTGGGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAGAAGAAGATTCTCTCCATTCGGGATAGGGGTATTGGTATGACCAAGGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcctttgtactgatttctcttaaagttatgtgtattctcttgctaaaactttagtattatctatttgtttgtaaagagaattttaccaagtgccatttaacttaaacttgagtgataccaattccttgaaatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC