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TACGGATCCGTTCTTGCATATCAGAGTGCTTAAGCTCATGCGAATTTTGGGTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAGgtgaattgtttgtttttattttatacacaacagaaatttcactatgcaaatcacatctgttctgatcattttgtagacagttcatgatcattacaccctc...
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAG GTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATEST: gi|29672354|gb|CB668629.1|CB668629
genomic: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAGgtgaattgtt ... gcatttccagGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATAT
EST: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAG GTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATEST: gi|88351874|gb|CI624679.1|CI624679
genomic: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAGgtgaattgtt ... gcatttccagGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATAT
EST: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAG GTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATAT
genomic: GTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAGgtgaattgtt ... gcatttccagGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGATCCGTTCTTGCATATCAGAGTGCTTAAGCTCATGCGAATTTTGGGTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCTCAGgtgaattgtttgtttttattttatacacaacagaaatttcactatgcaaatcacatctgttctgatcattttgtagacagttcatgatcattacaccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT