Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACTgtaagtttcctcctattctatagtgatatgcagcattgaaaaatcgatggtgtcatctgctttaactgattggttttaatagccatgcttgtctaaacta...

Basic information

species Oryza sativa
transcript LOC_Os05g35730.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35730.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G011169_T01 (Zea mays), 5'ss of exon 5
TATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACTgtaagtttcctcctattctatag----tgatatgcagcattgaaaaatcgatggtgtcatctgctttaa-ctgattggtttt-aatagccatgcttgt-ctaaacta------------------------------------------------------------------
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || |||||||| ||||||||||||||||| |||||||    | ||    | |     ||||| |   || |     ||  |       |  |  ||||| ||  ||    || ||||  |||  |    | | |  |                                                                  
TATGTGAAGCACTTGGTCTTTTCTATGGCAATCAAAGGATGGAATGTTGTTGTAAGCAACCACAGGGGTCTTGGTGGCATCTCCATAACAgtaagttcttccataggtcaaaacttatgataagacacaattttctattaaaaaaccaagattttttaagctagttaaccttgaatacacattataacaccagaagaattgtcaccaacattagttgctgataaaagatttagatgtctattgttacttttttctgtttgcag