1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgtttttattttgtaatcttgtccttctctctgtactaatacattttatttcccatgttagcacgtcactcatatatctccctaatactgtag
species | Oryza sativa |
transcript | LOC_Os05g22970.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33819107|gb|CF335378.1|CF335378
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|38478143|gb|CF962276.1|CF962276
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTAGCATAATGGGAAEST: gi|87026661|gb|CI254767.1|CI254767
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AGAGGACTGTTTGGACTTTTGGGCAAA-GGCNTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|38482501|gb|CF966535.1|CF966535
genomic: AGAGGACTGTTTGGACTTTTGGGCAAAGGGC-TACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|87034760|gb|CI189384.1|CI189384
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|25800681|gb|CA756642.1|CA756642
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGACCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33819105|gb|CF335377.1|CF335377
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: GACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|86599770|gb|CI255932.1|CI255932
genomic: GACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGGCTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33813839|gb|CF332805.1|CF332805
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|58687672|gb|CK076359.1|CK076359
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33815680|gb|CF333691.1|CF333691
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGGCTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|86536276|gb|CI176482.1|CI176482
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33813841|gb|CF332806.1|CF332806
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: GAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|86496472|gb|CI139105.1|CI139105
genomic: GAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|88575843|gb|CI669988.1|CI669988
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTCTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCANACA CAACTGGGGCACAGAAAATGEST: gi|58588133|gb|CF986441.1|CF986441
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATG
EST: ACGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|86593628|gb|CI264507.1|CI264507
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: GGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|58692806|gb|CK081493.1|CK081493
genomic: GGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|86511468|gb|CI154101.1|CI154101
genomic: AAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: GGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAAEST: gi|33815682|gb|CF333692.1|CF333692
genomic: GGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
EST: ACACTTGAGCTCACACA CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
genomic: ACACTTGAGCTCACACAgtatgtgttt ... aatactgtagCAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGGAATCGGCCCCTACTGATCCTGTAAAGAGGACTGTTTGGACTTTTGGGCAAAGGGCTACACTTGAGCTCACACAgtatgtgtttttattttgtaatcttgtccttctctctgtactaatacattttatttcccatgttagcacgtcactcatatatctccctaatactgtag
- - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA