1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAGgtaagctcgagttccagttgcaggatcgcatcatatagtgaatataagtatgctatttattctctgatatgcacctttctgtttacccctcaaaatgcag
species | Oryza sativa |
transcript | LOC_Os04g43420.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAG TTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTTEST: gi|58608166|gb|CK036199.1|CK036199
genomic: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAGgtaagctcga ... caaaatgcagTTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTT
EST: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAG TTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTTEST: gi|29656802|gb|CB653077.1|CB653077
genomic: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAGgtaagctcga ... caaaatgcagTTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTT
EST: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAG TTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTT
genomic: AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAGgtaagctcga ... caaaatgcagTTTTTGGAGTGGGTCGGTGAAGATACGAAGTGTCCATACTGTGAAGGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTGATGGAACAGGTGAGCCGAACATTGAACCACAGgtaagctcgagttccagttgcaggatcgcatcatatagtgaatataagtatgctatttattctctgatatgcacctttctgtttacccctcaaaatgcag
- - GATGGA