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GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaattgagtcagagtgcaaaccgatcatttttgcgtgtttgtgagaaatatttccaataatatctagaatagaggaagtaactttgcatcatcag
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTGEST: gi|29667065|gb|CB663340.1|CB663340
genomic: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
EST: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTGEST: gi|29645498|gb|CB650505.1|CB650505
genomic: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
EST: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTGEST: gi|117216962|gb|CT845285.1|CT845285
genomic: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
EST: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTGEST: gi|29638285|gb|CB643294.1|CB643294
genomic: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
EST: GAAGGACTTTCAATCT-TTAAAGGAAAGNAAAGAACTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATACCCAAATTGEST: gi|29630458|gb|CB635467.1|CB635467
genomic: GAAGGACTTTCAAT-TAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
EST: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG GTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
genomic: AGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaa ... gcatcatcagGTACATTTAGAGAAATCTATCACACGGCATAAAGCTCACATAAAGAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTGgtatgatcaattgagtcagagtgcaaaccgatcatttttgcgtgtttgtgagaaatatttccaataatatctagaatagaggaagtaactttgcatcatcag
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC