1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGACCGTTATTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtgatctttgtactatttccttttcctctaatgctatcatatgcctatttattaaccaaaaatttatccgtgacctctactcag
species | Oryza sativa |
transcript | LOC_Os03g25940.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATCEST: gi|12622757|gb|AU172970.1|AU172970
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATCEST: gi|38478380|gb|CF962513.1|CF962513
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATCEST: gi|58596991|gb|CK007519.1|CK007519
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATCEST: gi|2311404|gb|C27559.1|C27559
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATCEST: gi|29671055|gb|CB667330.1|CB667330
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
EST: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAAT GTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
genomic: TTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtga ... ctctactcagGTATCCCTATTCTTCACCGAGACTCCTACTAATCCATTTCTGAGATGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACCGTTATTAGACCTGCTGACATGGATGCTCTCCAAAATGCACTGGATAATAATAATgtgagtgtgatctttgtactatttccttttcctctaatgctatcatatgcctatttattaaccaaaaatttatccgtgacctctactcag
- - - - - - - - - - - CATGGA