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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCACGCTTGTTAGCCCGAAAGCTGAAGGTCGAAGGTTATATGCAGATCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAACgtaagaacactgcttatactgcctgtcaatttttctcttataattcagagcctaacatccgtttgctaaatgttgaacag

Basic information

species Oryza sativa
transcript LOC_Os03g02380.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66928144|gb|CX114992.1|CX114992
EST:     TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAAC                         ATTCTAGTGCCAACTTCTTCAGTGAAAGGAGGTAGCATCTCATTTGGAGGC
genomic: TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAACgtaagaacac ... tgttgaacagATTCTAGTGCCAACTTCTTCAGTGAAAGGAGGTAGCATCTCATTTGGAGGC
EST: gi|29656297|gb|CB652572.1|CB652572
EST:     TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAAC                         ATTCTAGTGCCAACTTCT
genomic: TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAACgtaagaacac ... tgttgaacagATTCTAGTGCCAACTTCT
EST: gi|87005474|gb|CI285696.1|CI285696
EST:     TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAAC                         ATTCTAGTGCCAGCTTCTTCAGTGAAAGGAGGTAGCATCTCA
genomic: TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAACgtaagaacac ... tgttgaacagATTCTAGTGCCAACTTCTTCAGTGAAAGGAGGTAGCATCTCA
EST: gi|2311492|gb|C27647.1|C27647
EST:     TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAAC                         ATTCTAGTGCCAACTTCTTCAGTGAAAGGAGGTAGCATCTCATTTGGAGGC
genomic: TCGTGTTTACAATATCAGCCTTCACCCTTTTCCTTCCTGTTGTCACCAACgtaagaacac ... tgttgaacagATTCTAGTGCCAACTTCTTCAGTGAAAGGAGGTAGCATCTCATTTGGAGGC